Home
Browse
Prime browse
Clustered VIS browse
Search
Curation
Gene
Target gene
All
Oncogene
Tumor suppressor gene
Nearby gene
All
Oncogene
Tumor suppressor gene
MicroRNA
RNA-interaction
ncRNA
Host2Host
Host2Virus
Virus2Host
• miRNA
Host2Host
Host2Virus
Virus2Host
• lncRNA
Host2Host
Host2Virus
Virus2Host
Download
Statistics
Help
VISDB
Viral Integration Site DataBase
Homepage
Prime VIS Browse Options
TVIS30005974
Basic Information
VIS ID
TVIS30005974
Fusion event
HIV-REXO2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q23.2
Reference genome
GRCh37/hg19
Start
114319379/114448657 (Hg38)
End
114319379/114448657 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA11G
Target gene
REXO2
miRNAs that regulate target gene
hsa-mir-1229-3p
;
hsa-mir-92b-3p
;
hsa-mir-30c-5p
;
hsa-mir-218-5p
;
hsa-mir-3175
;
hsa-mir-6878-5p
;
hsa-mir-31-5p
;
hsa-mir-650
;
hsa-mir-5703
;
hsa-mir-3612
;
hsa-mir-4516
;
hsa-mir-4434
;
hsa-mir-6133
;
hsa-mir-6130
;
hsa-mir-6129
;
hsa-mir-6127
;
hsa-mir-4510
;
hsa-mir-4756-5p
;
hsa-mir-4419a
;
hsa-mir-4739
;
hsa-mir-1321
;
hsa-mir-4779
;
hsa-mir-562
;
hsa-mir-362-3p
;
hsa-mir-8485
;
hsa-mir-329-3p
;
hsa-mir-4634
;
hsa-mir-6858-3p
;
hsa-mir-6720-5p
;
hsa-mir-6512-3p
;
hsa-mir-210-5p
;
hsa-mir-4252
;
hsa-mir-3925-3p
;
hsa-mir-766-3p
;
hsa-mir-6727-3p
;
hsa-mir-4722-3p
;
hsa-mir-6752-3p
;
hsa-mir-6810-3p
;
hsa-mir-6801-3p
;
hsa-mir-6849-3p
;
hsa-mir-6760-3p
;
hsa-mir-6769a-3p
Nearest miRNA
hsa-mir-10392/Upstream/998569; hsa-let-7a-2/Downstream/4195343;
Nearest TSS
ENST00000527297/Upstream/3539;
ENST00000544507/Downstream/280;
Nearest CpG islands
None/Target,
chr11-CpG: 30/Upstream/8793
,
chr11-CpG: 26/Downstream/512378
Upstream sequence
TGTAGCACAGGCATAcaggcctagactaccttatctgacacaactggggtatgttttgatttcagaatttttcagattttagaaaggtgttactacatct
Downstream sequence
gtattgtttattatcttgtagcatccctaacaaggtttgagaagcagcccataataaaacacataggtattctgcagtgaaacgtgtatattcacaccaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
Download
Curate