Basic Information
VIS ID
TVIS30006006
Fusion event
HIV-SORL1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
121380648/121509939 (Hg38)
End
121380648/121509939 (Hg38)
Orient
+
Location type
Intronic
Target gene
SORL1
miRNAs that regulate target gene
hsa-mir-127-5p ; hsa-mir-1229-3p
Nearest miRNA
hsa-mir-10392/Upstream/2196927; hsa-let-7a-2/Downstream/589818;
Nearest TSS
ENST00000527297/Upstream/56926; ENST00000524873/Downstream/45103;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/57346, chr11-CpG: 113/Downstream/1145631
Upstream sequence
GACTCTATAAGATTGAATTAGATTCAAATATTTAAATCATTTCTACTAGTTGATGAAGTTTGTGCATTtgtggatgtattagttggtacaacctttcagg
Downstream sequence
agggctatttcatgatagctatcaaaaatacaaattttgacttaataattcttctaagactgcatcctaccaatggtattgtgcagttctgaaaaagtaa
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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