Basic Information
VIS ID
TVIS30006008
Fusion event
HIV-chr11 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q24.1
Reference genome
GRCh37/hg19
Start
123141333/123270625 (Hg38)
End
123141333/123270625 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7a-2/Upstream/1118317; hsa-mir-3167/Downstream/110815;
Nearest TSS
ENST00000527297/Upstream/75344; ENST00000533341/Downstream/44142;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/74347, chr11-CpG: 54/Downstream/31121
Nearby gene
CLMP(No orient, 75320)
Upstream sequence
tgctgtgattacaggcttgagccaccgcgcccggccACTAGAGCCTTTTTATCTATGTGAGATAACGGATGACCCAAGCAATCTCGGATATCTTCCCAGT
Downstream sequence
TTCTTCATGTTCACTGTCCCAGAGAGAAAAAGGACACAAGAggctgacgcctgtaatcccagtactttgggaggctgtggtgggtggatcacctgtggtc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate