VISDB Viral Integration Site DataBase

VIS ID

TVIS30006010

Fusion event

HIV-GRAMD1B integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q24.1

Reference genome

Start

End

123254815/123384107 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1277-5p ; hsa-mir-3686 ; hsa-mir-6083 ; hsa-mir-190a-3p ; hsa-mir-601 ; hsa-mir-4778-5p ; hsa-mir-4742-3p ; hsa-mir-8076 ; hsa-mir-5011-5p ; hsa-mir-6873-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-1236-3p ; hsa-mir-6515-3p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-1273g-3p ; hsa-mir-181a-2-3p ; hsa-mir-99b-3p ; hsa-mir-99a-3p ; hsa-mir-2861 ; hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-4279 ; hsa-mir-6881-3p ; hsa-mir-6749-3p ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-2116-3p ; hsa-mir-877-3p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p ; hsa-mir-1227-5p ; hsa-mir-128-1-5p ; hsa-mir-128-2-5p ; hsa-mir-2278 ; hsa-mir-4640-5p ; hsa-mir-4726-5p ; hsa-mir-4786-5p ; hsa-mir-6165 ; hsa-mir-6501-3p ; hsa-mir-6762-5p ; hsa-mir-6845-5p

Nearest miRNA

hsa-let-7a-2/Upstream/2595; hsa-mir-3167/Downstream/3604351;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/25343, chr11-CpG: 90/Downstream/46234

Nearby gene

MIR4493(No orient, 2595)

Upstream sequence

ttacaggcatgcaccaccacgcccagctaatttttgtgtttttagtagagatggggtttaccatgttggccagggtggtcttgaactcctgacctcaagt

Downstream sequence

gatccacctgccttggcctcccaaagtgctgagattacaggcatgagacactgtgcctggcccatccattcatcTTTAAAAATCAGCATACATGTATTGC