VISDB Viral Integration Site DataBase

VIS ID

TVIS30006023

Fusion event

HIV-ZBTB44 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr11

Cytoband

q24.3

Reference genome

Start

End

130110881/130240986 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-652-3p ; hsa-mir-6720-5p ; hsa-mir-6512-3p ; hsa-mir-196a-3p ; hsa-mir-661 ; hsa-mir-1273f ; hsa-mir-4708-5p ; hsa-mir-6088 ; hsa-mir-4770 ; hsa-mir-143-3p ; hsa-mir-6860 ; hsa-mir-612 ; hsa-mir-5189-5p ; hsa-mir-3187-5p ; hsa-mir-1285-3p ; hsa-mir-766-3p ; hsa-mir-939-3p ; hsa-mir-6849-3p ; hsa-mir-759 ; hsa-mir-5586-3p ; hsa-mir-508-5p ; hsa-mir-4797-5p ; hsa-mir-3145-5p ; hsa-mir-374b-3p ; hsa-mir-5007-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-1279 ; hsa-mir-922 ; hsa-mir-664a-3p ; hsa-mir-6074 ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-5692a ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-7106-3p ; hsa-mir-873-5p ; hsa-mir-4784 ; hsa-mir-3150b-3p ; hsa-mir-4685-3p ; hsa-mir-4699-5p ; hsa-mir-4287 ; hsa-mir-501-5p ; hsa-mir-500b-5p ; hsa-mir-362-5p ; hsa-mir-5088-5p ; hsa-mir-6165 ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-1290 ; hsa-mir-3159

Nearest miRNA

hsa-let-7a-2/Upstream/1718537; hsa-mir-4697/Downstream/425749;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/31240, chr11-CpG: 70/Downstream/73067

Upstream sequence

gtggcagttatgtctaaaacagttatcattttgcctttaaaggaaagtttgccaaGGCTTGccataaacaatactttttagtgttgtctggctgttttat

Downstream sequence

ataaaccgggtcatactatatgtattcttttgtcttgcttctttcctccaacattgtggactcatcgtttttacgtgtaaccaaagtttattttcattgt