Basic Information
VIS ID
TVIS30006025
Fusion event
HIV-IGSF9B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr11
Cytoband
q25
Reference genome
GRCh37/hg19
Start
133780524/133910629 (Hg38)
End
133780524/133910629 (Hg38)
Orient
-
Location type
Intronic
Target gene
IGSF9B
miRNAs that regulate target gene
hsa-mir-10a-5p ; hsa-mir-1305 ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-607 ; hsa-mir-4753-3p ; hsa-mir-6873-3p ; hsa-mir-627-3p ; hsa-mir-130b-5p ; hsa-mir-6817-3p ; hsa-mir-7110-3p ; hsa-mir-5685 ; hsa-mir-4690-3p ; hsa-mir-500b-3p ; hsa-mir-3613-3p ; hsa-mir-4668-3p ; hsa-mir-548c-3p ; hsa-mir-129-5p ; hsa-mir-4715-3p ; hsa-mir-1227-3p ; hsa-mir-365b-5p ; hsa-mir-365a-5p ; hsa-mir-8052 ; hsa-mir-3199 ; hsa-mir-4487 ; hsa-mir-6872-3p ; hsa-mir-455-5p ; hsa-mir-1295b-3p ; hsa-mir-625-3p
Nearest miRNA
hsa-let-7a-2/Upstream/12048;
Nearest TSS
ENST00000527297/Upstream/65091; ENST00000532272/Downstream/1489;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/45360, chr11-CpG: 29/Downstream/7708
Upstream sequence
taccagtgctagtgattaaaccgaggaagagctgaggagaagcagacctggagaggctgatcaataactctgctttagacatcgtaaaggcgtatgaaac
Downstream sequence
acccaagtgcacgttcagctggcaactggaaatatcagccatgacctcagggaagggacctgggctaaagacagacatttggaagatgccaccacagaac
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate