VISDB Viral Integration Site DataBase

VIS ID

TVIS30006026

Fusion event

HIV-KDM5A integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.33

Reference genome

Start

End

436777/327611 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-130b-5p ; hsa-mir-517-5p ; hsa-mir-5684 ; hsa-mir-136-5p ; hsa-mir-526a ; hsa-mir-523-5p ; hsa-mir-522-5p ; hsa-mir-520c-5p ; hsa-mir-519c-5p ; hsa-mir-519b-5p ; hsa-mir-519a-5p ; hsa-mir-518f-5p ; hsa-mir-518e-5p ; hsa-mir-518d-5p ; hsa-mir-4662a-5p ; hsa-mir-539-5p ; hsa-mir-520g-5p ; hsa-mir-3123 ; hsa-mir-3925-5p ; hsa-mir-4797-5p ; hsa-mir-618 ; hsa-mir-4284 ; hsa-mir-4772-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-1304-3p ; hsa-mir-6741-3p ; hsa-mir-4485-5p ; hsa-mir-6890-3p ; hsa-mir-4655-5p ; hsa-mir-559 ; hsa-mir-548y ; hsa-mir-548w ; hsa-mir-548o-5p ; hsa-mir-548j-5p ; hsa-mir-548i ; hsa-mir-548h-5p ; hsa-mir-548d-5p ; hsa-mir-548c-5p ; hsa-mir-548bb-5p ; hsa-mir-548b-5p ; hsa-mir-548ay-5p ; hsa-mir-548au-5p ; hsa-mir-548as-5p ; hsa-mir-548ar-5p ; hsa-mir-548aq-5p ; hsa-mir-548ap-5p ; hsa-mir-548am-5p ; hsa-mir-548ak ; hsa-mir-548ae-5p ; hsa-mir-548ad-5p ; hsa-mir-548ab ; hsa-mir-548a-5p ; hsa-mir-548n ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-4634 ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-96-5p ; hsa-mir-1271-5p ; hsa-mir-182-5p ; hsa-mir-6809-3p ; hsa-mir-7150 ; hsa-mir-4753-3p ; hsa-mir-4778-3p ; hsa-mir-136-3p ; hsa-mir-181c-5p ; hsa-mir-181d-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p

Nearest miRNA

hsa-let-7i/Downstream/1332704;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/123446, chr12-CpG: 37/Downstream/61321

Nearest cancer related gene

KDM5A(TSG, No orient, 0)

Upstream sequence

ccagcctagccaacatagtaaaaccccatctctactaaaaatacaaaactggctggtcaaggtggcgcatgcctgtaatcccagctacttggtaggctaa

Downstream sequence

ggcaggagaatcgctgaacctgggaggcggaggttgcagtgagccaagatcgtgccactgcactccagcctgagcaacacagtgagactctgtctcaaaa