Basic Information
VIS ID
TVIS30006038
Fusion event
HIV-RAD52 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
1089449/980283 (Hg38)
End
1089449/980283 (Hg38)
Orient
+
Location type
Intronic
Target gene
RAD52
miRNAs that regulate target gene
hsa-mir-210-3p ; hsa-mir-373-3p ; hsa-mir-607 ; hsa-mir-3671
Nearest miRNA
hsa-let-7i/Downstream/680032;
Nearest TSS
ENST00000382841/Upstream/30561; ENST00000587595/Downstream/9758;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/30019, chr12-CpG: 81/Downstream/10108
Upstream sequence
catctTGGCCAGCGGGGGGTGGAAGGGGAGGGAAGAGAGTTATTTATATAGGCTAGAAAAAAAAATATCGGATATGTGATTTGCAAAATGTCTCCTATTG
Downstream sequence
TGTTGTCtttcctttttttttttttttgagacgaagtctcactcttgtcccccaggctggagtacaatggtgcgatcttggcccactgcaacctctgcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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