VISDB Viral Integration Site DataBase

VIS ID

TVIS30006040

Fusion event

HIV-ERC1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.33

Reference genome

Start

End

1581810/1472644 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-let-7b-5p ; hsa-mir-335-5p ; hsa-mir-183-5p ; hsa-mir-26b-5p ; hsa-let-7d-5p ; hsa-mir-320b ; hsa-mir-1229-3p ; hsa-mir-320a ; hsa-mir-221-3p ; hsa-mir-27b-3p ; hsa-mir-27a-3p ; hsa-mir-513a-5p ; hsa-mir-4278 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-920 ; hsa-mir-6726-5p ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-4487 ; hsa-mir-4445-5p ; hsa-mir-6754-5p ; hsa-mir-342-3p ; hsa-mir-4441 ; hsa-mir-4270 ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-6732-5p ; hsa-mir-6805-5p ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6760-5p ; hsa-mir-6510-5p ; hsa-mir-6873-5p ; hsa-mir-143-5p ; hsa-mir-6879-3p ; hsa-mir-3652 ; hsa-mir-4430 ; hsa-mir-122-5p ; hsa-mir-504-3p ; hsa-mir-3135b ; hsa-mir-6499-3p ; hsa-mir-4462 ; hsa-mir-6773-3p ; hsa-mir-4638-5p ; hsa-mir-1307-3p ; hsa-mir-5190 ; hsa-mir-500b-3p ; hsa-mir-1277-5p ; hsa-mir-190a-3p ; hsa-mir-5011-5p ; hsa-mir-1267 ; hsa-mir-203b-3p ; hsa-mir-3183 ; hsa-mir-3612 ; hsa-mir-4723-3p ; hsa-mir-5196-3p ; hsa-mir-650 ; hsa-mir-6769b-3p ; hsa-mir-6787-3p ; hsa-mir-7111-3p ; hsa-mir-7158-3p

Nearest miRNA

hsa-let-7i/Downstream/187671;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/481025, chr12-CpG: 238/Downstream/57223

Upstream sequence

gaagctgaggtgagagaatcacttcagcccaagaggtagagattgcagtgagccgtgatcacaccactgcactccagcctgggcaacagagtgtaaccct

Downstream sequence

gtctcaaaagaaaaaaaaaaagagaagagaaaaggaaggaagggagaaagaaaaggaaaaaaggaaggaagggaaggagggaggaaggaagATAAATCTA