VISDB Viral Integration Site DataBase

VIS ID

TVIS30006041

Fusion event

HIV-ADIPOR2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.33

Reference genome

Start

End

1838006/1728840 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-375 ; hsa-mir-124-3p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-let-7c-5p ; hsa-let-7d-5p ; hsa-let-7e-5p ; hsa-let-7f-5p ; hsa-mir-98-5p ; hsa-let-7g-5p ; hsa-let-7i-5p ; hsa-mir-202-3p ; hsa-mir-1236-3p ; hsa-mir-1304-5p ; hsa-mir-4458 ; hsa-mir-4500 ; hsa-mir-4768-5p ; hsa-mir-6515-3p ; hsa-mir-6809-3p ; hsa-mir-6833-3p ; hsa-mir-4264 ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-150-5p ; hsa-mir-4704-3p ; hsa-mir-3613-3p ; hsa-mir-186-5p ; hsa-mir-548c-3p ; hsa-mir-3130-3p ; hsa-mir-4717-5p ; hsa-mir-4753-5p ; hsa-mir-6768-3p ; hsa-mir-3658 ; hsa-mir-3119 ; hsa-mir-549a ; hsa-mir-3678-5p ; hsa-mir-892b ; hsa-mir-127-5p ; hsa-mir-6806-3p ; hsa-mir-3928-5p ; hsa-mir-4753-3p ; hsa-mir-6516-3p ; hsa-mir-942-5p ; hsa-mir-4797-3p ; hsa-mir-3121-5p ; hsa-mir-501-5p ; hsa-mir-4793-3p

Nearest miRNA

hsa-mir-3649/Upstream/68460; hsa-let-7i/Downstream/5234859;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/37267, chr12-CpG: 125/Downstream/67271

Upstream sequence

ataaataaataaaAGAAAGCTCTGCATGATACAATACAGTATTCATAGAATTTTGGCCAGTGAAAATTTTCTGTGTTAGTAGAATAAAAATGAACTCTTC

Downstream sequence

TGATTTACAGATATTGATAGTCTGGTCTTTCCATCTTCCATCTTGACTCTCTTTTACTGTTAAAAAATCTTAGAACAAAGTAAAGCCAGTTCCAAATACT