Basic Information
VIS ID
TVIS30006042
Fusion event
HIV-DCP1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.33
Reference genome
GRCh37/hg19
Start
2079257/1970091 (Hg38)
End
2079257/1970091 (Hg38)
Orient
-
Location type
Intronic
Target gene
DCP1B
Nearest miRNA
hsa-mir-3649/Upstream/309711; hsa-let-7i/Downstream/4993608;
Nearest TSS
ENST00000382841/Upstream/2181; ENST00000354425/Downstream/695;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/61510, chr12-CpG: 48/Downstream/34086
Upstream sequence
GGAAAAAATGGCCGTTGTTGTCTCATGAATAGGCTCTATTAATAAGAATATTCTGGGTATCTTTCGTTTGATGTTATACATTTGCGGCATTTGACATAAG
Downstream sequence
GAATTAGGCTTTCGTAAGGGTGGGATGCCAAGAAAACTGTTGATACAAATAGAAAAGCAGTTTGACAGTGTCATCACCATGAGATAACTGAAATGCAGAT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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