Basic Information
VIS ID
TVIS30006043
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
4243314/4134148 (Hg38)
End
4243314/4134148 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3649/Upstream/2473768; hsa-let-7i/Downstream/2829551;
Nearest TSS
ENST00000382841/Upstream/108163; ENST00000541542/Downstream/139624;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/102810, chr12-CpG: 54/Downstream/30505
Nearby gene
CCND2-AS1(No orient, 114619)
Upstream sequence
CGGCAGCTCCCTTGCCATCAGGCTCTTCCCAGCTTGCAGCTGCTCCCAGACACTGTCTCCTGGGGAAACAGCTGCTGCTTCCCCTTCCTGAATGGAGCTG
Downstream sequence
CTCATGCTTTCCACCAGCCTGCTACTGGTCCAGTCCTGTGGGGAGACACACGCACGCACACACACGTATATGCACACCCACGCGAGCATCCATAGCTGCA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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