Basic Information
VIS ID
TVIS30006044
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
4328110/4218944 (Hg38)
End
4328110/4218944 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3649/Upstream/2558564; hsa-let-7i/Downstream/2744755;
Nearest TSS
ENST00000382841/Upstream/192959; ENST00000541542/Downstream/54828;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/53619, chr12-CpG: 38/Downstream/24812
Nearby gene
CCND2-AS1(No orient, 29823)
Upstream sequence
tagtacacaggtctgtttctgcattctctatcctattccatcagtcaatgtgcccatcctgtggcgctgccacaatgtcttcattactCAGGCAGTGTGT
Downstream sequence
GATTAGCCTCTTGTGGCTCTGTTTCCCCCAAAATTGGCAATGATGTTATCTCTCTCTTTAGAACTTTATGGTTCAGATGAATTTCCTTTTCTCTCTGACC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate