Basic Information
VIS ID
TVIS30006047
Fusion event
HIV-RAD51AP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.32
Reference genome
GRCh37/hg19
Start
4657886/4548720 (Hg38)
End
4657886/4548720 (Hg38)
Orient
+
Location type
Exonic
Target gene
RAD51AP1
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-346 ; hsa-mir-18a-5p ; hsa-mir-18b-5p ; hsa-mir-708-3p ; hsa-mir-4735-3p ; hsa-mir-548at-5p ; hsa-mir-7844-5p ; hsa-mir-4724-5p ; hsa-mir-561-3p
Nearest miRNA
hsa-mir-3649/Upstream/2888340; hsa-let-7i/Downstream/2414979;
Nearest TSS
ENST00000382841/Upstream/4936; ENST00000544931/Downstream/1795;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/9833, chr12-CpG: 40/Downstream/13423
Upstream sequence
TCTGCAGTTCTTGAAATATCAGTTGTCACAGAAAGTTTTCCATTGATTTTTATGCCTCTCCTGAAGATTTGGATAAGATTACTGTGGAAGATGATGTTGG
Downstream sequence
TGGTGTTCAAGGGAAAAGAAAAGCAGCATCTAAAGCTGCAGCACAGCAGAGGAAGATTCTTCTGGAAGGCAGTGATGGTGATAGTGCTAATGACACTGAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate