Basic Information
VIS ID
TVIS30006050
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
6531594/6422428 (Hg38)
End
6531594/6422428 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-3649/Upstream/4762048; hsa-let-7i/Downstream/541271;
Nearest TSS
ENST00000382841/Upstream/28523; ENST00000266557/Downstream/22439;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/38072, chr12-CpG: 76/Downstream/47961
Nearby gene
CD27-AS1(No orient, 16573)
Upstream sequence
caatgccatgatctcagctcactgcaacctctgcctcccgggtttaagcgattctcctgcctcagcctgccaagtagctgggattacaggcacgtgccaa
Downstream sequence
cgcatccagctaatttttgtatttttagtagagacaggtttcaccatgttgaccaggatggtctcgatctcctgacctcgtgatccgcatgcctcggcct
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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