Basic Information
VIS ID
TVIS30006052
Fusion event
HIV-CD27-AS1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
6555119/6445953 (Hg38)
End
6555119/6445953 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
CD27-AS1
Nearest miRNA
hsa-mir-3649/Upstream/4785573; hsa-let-7i/Downstream/517746;
Nearest TSS
ENST00000382841/Upstream/601; ENST00000544826/Downstream/5737;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/61597, chr12-CpG: 76/Downstream/24436
Upstream sequence
TTTCGGGcaagcaacccccaaccaataaactgactgtgttcccagagtgcacatgtgcaggttggccattgggaatttggaatacatctttctaaggaaa
Downstream sequence
taaCAAAGCAACCCAATAGGTAACAACCTTTTTTTGCACAAAAGCCAATTTGAGAAAATGAGTATGTATGTAGCCTGTGTTTTTATTTTATAGTTCCAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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