VISDB Viral Integration Site DataBase

VIS ID

TVIS30006056

Fusion event

HIV-LPCAT3 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.31

Reference genome

Start

End

7114156/7006851 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-let-7b-5p ; hsa-mir-3679-3p ; hsa-mir-4327 ; hsa-mir-198 ; hsa-mir-4665-5p ; hsa-mir-1275 ; hsa-mir-6763-5p ; hsa-mir-5011-3p ; hsa-mir-3150a-3p ; hsa-mir-5010-5p ; hsa-mir-4525 ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-5698 ; hsa-mir-4723-5p ; hsa-mir-625-5p ; hsa-mir-6825-5p ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-3175 ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6069 ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-4257 ; hsa-mir-6847-5p ; hsa-mir-3910 ; hsa-mir-3714 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-124-3p ; hsa-mir-506-3p ; hsa-mir-328-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-6826-3p ; hsa-mir-874-5p ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-6756-3p ; hsa-mir-3127-3p ; hsa-mir-3613-3p ; hsa-mir-561-3p

Nearest miRNA

hsa-mir-141/Upstream/42660; hsa-let-7i/Downstream/2232616;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/35885, chr12-CpG: 88/Downstream/11379

Upstream sequence

GCTGTAGGAACTTTATGTGTACTATTTCAGTTGGCCTCTGCTGGCTTATAAACAGTAGTTGATATTTAGGGACAGTAATCCAGAGTAGTGTCCAAGTCCA

Downstream sequence

TCTGAGTTTAGAATTGCTACCACAGCAGAAATTGGAAACCTCGAGAGTTATAAGCCATTTACCACATCTACATGGATGCCACTTCTCCTTAAAGCATATA