Basic Information
VIS ID
TVIS30006057
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
8220084/8067488 (Hg38)
End
8220084/8067488 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-141/Upstream/1103297; hsa-let-7i/Downstream/1171979;
Nearest TSS
ENST00000382841/Upstream/1017; ENST00000546181/Downstream/9451;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/34468, chr12-CpG: 38/Downstream/14605
Nearby gene
C3AR1(No orient, 1129)
Upstream sequence
TTGCAGTCAAGTCACCACGGAATATTTTTGAGGCAGAAAGATCAAAAGAAAAATGCCAAGAGTTGAGTAGTATTTATTAGTTTATTTCCATTGTCATCAt
Downstream sequence
ctaattacaaaaatagaacatactttgttctagaagagataaattgaaataatacagaattataatgggtaaaaaaaatgaaagattttcttttcaattc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate