Basic Information
VIS ID
TVIS30006061
Fusion event
HIV-KLRG1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
9137559/8984963 (Hg38)
End
9137559/8984963 (Hg38)
Orient
+
Location type
Intronic
Target gene
KLRG1
miRNAs that regulate target gene
hsa-mir-877-3p
Nearest miRNA
hsa-mir-141/Upstream/2020772; hsa-let-7i/Downstream/254504;
Nearest TSS
ENST00000382841/Upstream/14534; ENST00000543895/Downstream/4578;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/34756, chr12-CpG: 36/Downstream/79769
Nearby gene
KLRG1(No orient, 4662)
Upstream sequence
atctgtgttatgtatcctcttttttgaagaaaagttttattggggaataatttcagatttacagaaatgtttttaagatagcacagaacatttctttata
Downstream sequence
cctttcaccccatttcccctaatgttagcatcttaaaaaatcatggcacatttctcaaatgtaagaaatgaatattgctacattgtttgaattttaccag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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