Basic Information
VIS ID
TVIS30006067
Fusion event
HIV-CD69 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
9909094/9756498 (Hg38)
End
9909094/9756498 (Hg38)
Orient
-
Location type
Intronic
Target gene
CD69
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-1244-3/Upstream/516947; hsa-let-7i/Downstream/2355454;
Nearest TSS
ENST00000382841/Upstream/23199; ENST00000537723/Downstream/4403;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/108242, chr12-CpG: 37/Downstream/354978
Upstream sequence
AATGGGGACTGGTGGCATCATCTGGAAGGGAGAAAGTTGATGATGAGTTCAGGCAGACTATAGAAGTACTATAGGAATATGCAACATTCTTTTGAGGCAT
Downstream sequence
TTAAACTTAATATTTCCTATCTCATTATATGAAATTTCCCCGTCTCTTTATAGAAATTTCTAAGTTAATTTACCCCCAATTTTGAGTGAATTTGAATAGT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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