Basic Information
VIS ID
TVIS30006071
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
9939630/9787034 (Hg38)
End
9939630/9787034 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/547483; hsa-let-7i/Downstream/2324918;
Nearest TSS
ENST00000382841/Upstream/26133; ENST00000537723/Downstream/40447;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/138778, chr12-CpG: 37/Downstream/324442
Nearby gene
CD69(No orient, 26133)
Upstream sequence
TTCTTGCCTGCCTCCTGATGTGTGGACATCTcggtaatatagcctgaatcagttatccaagattgttttcccttttgttgctataatctggctttggtcc
Downstream sequence
ccctctttttccctccttttcccccagtctttctttgcctacatttcccccccttctttcttcctccccttattttactctgtgggacataagactctgt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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