Basic Information
VIS ID
TVIS30006072
Fusion event
HIV-CLEC2B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
10015167/9862568 (Hg38)
End
10015167/9862568 (Hg38)
Orient
-
Location type
Exonic
Target gene
CLEC2B
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-1244-3/Upstream/623017; hsa-let-7i/Downstream/2249384;
Nearest TSS
ENST00000382841/Upstream/7719; ENST00000545258/Downstream/4459;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/214312, chr12-CpG: 37/Downstream/248908
Upstream sequence
ATGAAAAATAAAATGAAGGATGTAACTTACCTATCAGAGTAATAATATTAGTTGTTATTAAAACACCAACAATTATAAAACACTTTTTATGTTTGGTCAT
Downstream sequence
CATACCTGAAAAATAAAAATAAAGACATTTAGgagacttctggctccaaaatgatggcataaaagtaagttggctttaatgtcccccacagaaaacaaca
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate