Basic Information
VIS ID
TVIS30006074
Fusion event
HIV-LOC101928100 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.2
Reference genome
GRCh37/hg19
Start
10541545/10388946 (Hg38)
End
10541545/10388946 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
LOC101928100
Nearest miRNA
hsa-mir-1244-3/Upstream/1149395; hsa-let-7i/Downstream/1723006;
Nearest TSS
ENST00000382841/Upstream/6764; ENST00000538173/Downstream/30;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/175480, chr12-CpG: 39/Downstream/224410
Upstream sequence
ATCTAAAGTCTTCAATGCACAAAGGATTCCTGAATAAAATAAAACTGGGCATTTGTTTTTTGTTCTCTTTCCCGTGGTGAGATAAAATATTTTGAATAGA
Downstream sequence
AAAGTAAAATGCAGAAACTTTTCCCCTGTGCATGCCTTTAAGAAAAGAATAGAAATGACAATTCACATAAAGCCAGGCAAAATTAATTTTATACATTTCT
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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