VISDB Viral Integration Site DataBase

VIS ID

TVIS30006076

Fusion event

HIV-CREBL2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p13.1

Reference genome

Start

End

12781517/12628583 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-19b-3p ; hsa-mir-18a-5p ; hsa-mir-3175 ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-149-3p ; hsa-mir-4728-5p ; hsa-mir-6878-5p ; hsa-mir-7853-5p ; hsa-mir-372-5p ; hsa-mir-105-5p ; hsa-mir-548aw ; hsa-mir-7847-3p ; hsa-mir-4653-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-4424 ; hsa-mir-95-5p ; hsa-mir-4657 ; hsa-mir-4491 ; hsa-mir-4666a-3p ; hsa-mir-3908 ; hsa-mir-4422 ; hsa-mir-6835-3p ; hsa-mir-18b-5p ; hsa-mir-4735-3p ; hsa-mir-19a-3p ; hsa-mir-374b-3p ; hsa-mir-6794-3p ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-3185 ; hsa-mir-3919 ; hsa-mir-6513-3p ; hsa-mir-646 ; hsa-mir-503-5p ; hsa-mir-3925-5p ; hsa-mir-32-3p ; hsa-mir-6838-5p ; hsa-mir-497-5p ; hsa-mir-424-5p ; hsa-mir-195-5p ; hsa-mir-15b-5p ; hsa-mir-3978 ; hsa-mir-183-3p ; hsa-mir-4666a-5p ; hsa-mir-3688-3p ; hsa-mir-942-3p ; hsa-mir-4802-3p ; hsa-mir-6507-5p ; hsa-mir-186-5p ; hsa-mir-2681-5p ; hsa-mir-6749-3p ; hsa-mir-6832-3p ; hsa-mir-101-5p ; hsa-mir-548at-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/516547; hsa-let-7i/Downstream/136066;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/65659, chr12-CpG: 19/Downstream/67550

Upstream sequence

gaaatacagtttggtagcttgtgcttatcatatctaagaaaccattgcctaatccaaggtcataaggagtaaatcctctgttttcctctaagttttatag

Downstream sequence

ttttatctctgacatttaggcctttgttctattttttttaaatttgagacagggtctcactctgtcatctaggccggactgcagtggcacaaacccagct