Basic Information
VIS ID
TVIS30006077
Fusion event
HIV-LOC107984492 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p13.1
Reference genome
GRCh37/hg19
Start
13001465/12848531 (Hg38)
End
13001465/12848531 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC107984492
Nearest miRNA
hsa-mir-1244-3/Upstream/83788; hsa-let-7i/Downstream/67298;
Nearest TSS
ENST00000382841/Upstream/24146; ENST00000534831/Downstream/42251;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/35116, chr12-CpG: 49/Downstream/42577
Nearby gene
DDX47(No orient, 18550)
Upstream sequence
ggctcaagcaattcttccacctcagcctcctgagtagctgggcctataagtatgcaccatcatgcctggtgaatcttcaaactttttttgtagagatggg
Downstream sequence
atcccactttattgcccaggcttgtctcATTTGTATTTAACATGATTTTTTGGTATTTTTAGGTTTACTTTTAACAAATAAAAAACCCATAACatttttt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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