Basic Information
VIS ID
TVIS30006086
Fusion event
HIV-C12orf60 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
14976449/14823515 (Hg38)
End
14976449/14823515 (Hg38)
Orient
+
Location type
Exonic
Target gene
C12orf60
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-574-5p ; hsa-mir-297 ; hsa-mir-6867-5p ; hsa-mir-567 ; hsa-mir-223-5p ; hsa-mir-511-3p ; hsa-mir-5579-5p
Nearest miRNA
hsa-mir-1244-3/Upstream/1907597; hsa-let-7i/Downstream/2849784;
Nearest TSS
ENST00000382841/Upstream/9333; ENST00000444324/Downstream/17577;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/19978, chr12-CpG: 49/Downstream/397537
Upstream sequence
ACCAAAGAGCAATCAGATGTCACCACATCTGAGAGAACCAGAAGTCCTCCAGGTTCTTCCAAAACCACTATGATAGACACCTTGAAAAAACTGCAGGATG
Downstream sequence
TACTAAAAACTGAGGATTCCAAAAATCCCACAAAGTCAGCAGCAGATTTGTTGGAACAAATTGTCAAGGCTATGGGACCAATCTTAGAGATCCTCCAAAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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