Basic Information
VIS ID
TVIS30006087
Fusion event
HIV-LOC105369670 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.3
Reference genome
GRCh37/hg19
Start
15135423/14982489 (Hg38)
End
15135423/14982489 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369670
Nearest miRNA
hsa-mir-1244-3/Upstream/2066571; hsa-let-7i/Downstream/2690810;
Nearest TSS
ENST00000382841/Upstream/9467; ENST00000542689/Downstream/19344;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/178952, chr12-CpG: 49/Downstream/238563
Nearby gene
PDE6H(No orient, 624)
Upstream sequence
TCTAAGTTGTATAGTTCTAAGTTGGTGAGGAACTGGGATTTAAACTCAGAATTCTGACAATGTGAGCCTTCTTTTCGGTACTCTGGTTGAGGAAGGTTTC
Downstream sequence
CTTCCACGGCATCCCTTCAGTGAAATTATTTTGTCCAATGACTTAAAATGAGAGTCACAGGAGTTACATACATTGACTGCTTTGTGTACATCTGTAGTAA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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