Basic Information
VIS ID
TVIS30006095
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p12.2
Reference genome
GRCh37/hg19
Start
20380821/20227887 (Hg38)
End
20380821/20227887 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/2554493; hsa-let-7i/Downstream/3984534;
Nearest TSS
ENST00000382841/Upstream/98074; ENST00000542675/Downstream/141358;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/286463, chr12-CpG: 80/Downstream/141341
Nearby gene
LINC02398(No orient, 129019)
Upstream sequence
attcattcattgctgcaaaatggttcagctctttcttacaaaacttaccatacaatccagcaattggacccattgttatttaatcaaataagttgaaaat
Downstream sequence
tcatacccacacaaaaacttgtacatgaatatttatagcagctttattcgttattgccaaaacttgaaaataaccaaaatgccagttagtaaattaacag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate