Basic Information
VIS ID
TVIS30006103
Fusion event
HIV-ITPR2 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
26979533/26826600 (Hg38)
End
26979533/26826600 (Hg38)
Orient
-
Location type
Intronic
Target gene
ITPR2
miRNAs that regulate target gene
hsa-mir-335-5p ; hsa-mir-935 ; hsa-mir-877-3p ; hsa-mir-324-5p ; hsa-mir-324-3p ; hsa-mir-1913 ; hsa-mir-187-3p ; hsa-mir-3667-3p ; hsa-mir-6734-3p ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6752-3p ; hsa-mir-4793-5p
Nearest miRNA
hsa-mir-1244-3/Upstream/952521; hsa-let-7i/Downstream/15497100;
Nearest TSS
ENST00000382841/Upstream/100587; ENST00000544111/Downstream/6181;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/630403, chr12-CpG: 101/Downstream/5949
Upstream sequence
AACAAAGGAATGGAAAAGTTAATTGCATTGGCCAAAATCAAGCAGGAAGTAAAAATAAGGGCTCCAATCCTCTGTCACTCTGACTAAGAGACTATGATGA
Downstream sequence
TGATGCTTATGATGCTTTGAAGTCAGCGCATCAATTGGTAGTCACCTGATAGTTACTGAGACCTTAACTTCTAGGTGTTGGTTCTGAGGCGATCCTGAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate