VISDB Viral Integration Site DataBase

VIS ID

TVIS30006104

Fusion event

HIV-PPFIBP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p11.22

Reference genome

Start

End

27791630/27638697 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-155-5p ; hsa-mir-6818-3p ; hsa-mir-548aw ; hsa-mir-4684-5p ; hsa-mir-593-3p ; hsa-mir-6895-3p ; hsa-mir-1468-3p ; hsa-mir-548x-5p ; hsa-mir-548g-5p ; hsa-mir-548f-5p ; hsa-mir-548aj-5p ; hsa-mir-5699-3p ; hsa-mir-4421 ; hsa-mir-339-5p ; hsa-mir-10b-5p ; hsa-mir-10a-5p ; hsa-mir-6732-3p ; hsa-mir-548c-3p ; hsa-mir-125b-2-3p ; hsa-mir-1273h-5p ; hsa-mir-1288-5p ; hsa-mir-149-3p ; hsa-mir-196a-3p ; hsa-mir-30b-3p ; hsa-mir-30c-1-3p ; hsa-mir-30c-2-3p ; hsa-mir-3122 ; hsa-mir-3197 ; hsa-mir-340-3p ; hsa-mir-3613-3p ; hsa-mir-3689a-3p ; hsa-mir-3689b-3p ; hsa-mir-3689c ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-3913-5p ; hsa-mir-3929 ; hsa-mir-3974 ; hsa-mir-4419b ; hsa-mir-4432 ; hsa-mir-4433a-3p ; hsa-mir-4444 ; hsa-mir-4457 ; hsa-mir-4459 ; hsa-mir-4478 ; hsa-mir-450a-1-3p ; hsa-mir-451b ; hsa-mir-4649-3p ; hsa-mir-4696 ; hsa-mir-4728-5p ; hsa-mir-4768-3p ; hsa-mir-485-5p ; hsa-mir-513b-5p ; hsa-mir-6087 ; hsa-mir-616-5p ; hsa-mir-624-3p ; hsa-mir-6501-3p ; hsa-mir-6513-5p ; hsa-mir-665 ; hsa-mir-6765-5p ; hsa-mir-6779-5p ; hsa-mir-6780a-5p ; hsa-mir-6785-5p ; hsa-mir-6788-5p ; hsa-mir-6799-5p ; hsa-mir-6827-3p ; hsa-mir-6883-5p ; hsa-mir-6884-5p ; hsa-mir-7106-5p ; hsa-mir-7112-5p ; hsa-mir-7160-5p ; hsa-mir-887-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/1764618; hsa-let-7i/Downstream/14685003;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/304954, chr12-CpG: 39/Downstream/72003

Upstream sequence

CAAAGGCTTGTCAGAAAGGTAATACTGAAGAGCAGAGCATAGAGAGTAGAGGGAAAATGTTTAAGAGCAACCCTTTGCAATGAGGGAAGGAGTTGGGTCC

Downstream sequence

AGTTGCAATGGGAGTTAGGTTACAAACCACCCATACATAGTTCACTTCTTGCAATGAAAGAGTACAAACATTCCTCTGACTGAAGAGAAGCTTCTGGGAT