Basic Information
VIS ID
TVIS30006106
Fusion event
HIV-CCDC91 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
28672574/28519641 (Hg38)
End
28672574/28519641 (Hg38)
Orient
-
Location type
Intronic
Target gene
CCDC91
miRNAs that regulate target gene
hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-8485 ; hsa-mir-5689
Nearest miRNA
hsa-mir-1244-3/Upstream/2645562; hsa-let-7i/Downstream/13804059;
Nearest TSS
ENST00000382841/Upstream/67099; ENST00000542814/Downstream/29422;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/328667, chr12-CpG: 91/Downstream/629401
Upstream sequence
tttgtatctttctcttttctTTTTTTTTTCttttttttattattatacttcaagttctagggtacacgtgcacaacgtgcaggtttgttacatatgtata
Downstream sequence
catgtgccatgttggtgtgctgcacccattaactcatcatttacattaggtatatctcctaatgctatccctcccccctccccccaccccacaacaggcc
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate