Basic Information
VIS ID
TVIS30006107
Fusion event
HIV-LOC100506606 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
29466327/29313394 (Hg38)
End
29466327/29313394 (Hg38)
Orient
-
Location type
ncRNA_intronic
Target gene
LOC100506606
Nearest miRNA
hsa-mir-1244-3/Upstream/3439315; hsa-let-7i/Downstream/13010306;
Nearest TSS
ENST00000382841/Upstream/5425; ENST00000547759/Downstream/4454;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/163373, chr12-CpG: 30/Downstream/67119
Upstream sequence
CCAAATGTTTTAATAATGCCACATATGTTTTAATAAATGCCTATGAACCGGTGATTCTTGAGACTCttcaaattttaaactatcctgccatttttaggat
Downstream sequence
aaacccaagttggtcatagcatattatcttttttatattctgtttaattcagtttgctaatatttCCCTTGTTGttttctattgtctgaaagtgtttgtg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate