VISDB Viral Integration Site DataBase

VIS ID

TVIS30006109

Fusion event

HIV-ERGIC2 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

p11.22

Reference genome

Start

End

29511020/29358087 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-98-5p ; hsa-mir-32-5p ; hsa-let-7b-5p ; hsa-mir-671-3p ; hsa-mir-92a-3p ; hsa-mir-1277-5p ; hsa-mir-6079 ; hsa-mir-1273e ; hsa-mir-6894-5p ; hsa-mir-671-5p ; hsa-mir-6828-5p ; hsa-mir-4722-5p ; hsa-mir-151b ; hsa-mir-151a-5p ; hsa-mir-3131 ; hsa-mir-611 ; hsa-mir-6840-3p ; hsa-mir-665 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-6165 ; hsa-mir-448 ; hsa-mir-153-3p ; hsa-mir-6800-5p ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-135a-3p ; hsa-mir-9500 ; hsa-mir-6822-5p ; hsa-mir-5584-5p ; hsa-mir-6750-5p ; hsa-mir-495-5p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-4796-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-3613-3p ; hsa-mir-561-3p ; hsa-mir-5687 ; hsa-mir-4699-5p ; hsa-mir-500a-5p ; hsa-mir-3121-3p ; hsa-mir-5585-3p ; hsa-mir-6844 ; hsa-mir-4795-3p ; hsa-mir-4477a ; hsa-mir-627-3p ; hsa-mir-195-3p ; hsa-mir-16-2-3p ; hsa-mir-126-5p ; hsa-mir-338-5p ; hsa-mir-25-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-4778-3p ; hsa-mir-5009-3p ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-6510-5p ; hsa-mir-944 ; hsa-mir-4518 ; hsa-mir-1266-5p ; hsa-mir-3664-3p ; hsa-mir-654-3p ; hsa-mir-329-5p ; hsa-mir-4446-5p ; hsa-mir-4307 ; hsa-mir-576-3p ; hsa-mir-33a-3p ; hsa-mir-6839-3p ; hsa-mir-4507 ; hsa-mir-3940-5p ; hsa-mir-6740-5p ; hsa-mir-629-5p ; hsa-mir-500b-5p ; hsa-mir-362-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/3484008; hsa-let-7i/Downstream/12965613;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/208066, chr12-CpG: 30/Downstream/22426

Upstream sequence

AGGGCTTCTACTCACTTAAGTATCTCAATTCATCTTTCATGCATACATGCACAATTAACAAAATTCTTATCTTTGTCAGACACTGAATGAAATATTGTAG

Downstream sequence

ATACAAAGAGTAGGACAAATAAGGGGCTACACAATGGACTTGATGGACTTGAAATGGTACATTACTCAGTATAAACTCATACCACAAGTAACTGATTTTC