Basic Information
VIS ID
TVIS30006111
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.22
Reference genome
GRCh37/hg19
Start
30031942/29879009 (Hg38)
End
30031942/29879009 (Hg38)
Orient
-
Location type
Intronic
Target gene
LOC105369715 ; LOC105369716
Nearest miRNA
hsa-mir-1244-3/Upstream/4004930; hsa-let-7i/Downstream/12444691;
Nearest TSS
ENST00000382841/Upstream/94250; ENST00000549055/Downstream/321974;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/94509, chr12-CpG: 66/Downstream/290821
Nearby gene
TMTC1(No orient, 94250)
Upstream sequence
AAATTGTATAGTTTAGAGAGTAACAAGGCTAACCCACTCTTTTATAGTTCATTCATTTATCCCCAAATatctattaagctcctactctgtatcaggtaat
Downstream sequence
gtgcttatcattttatatttaatatccttttaaatagtctcaatcaccatattagggcattgttaAGAAGtattatttatttaaaaattatacacttata
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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