Basic Information
VIS ID
TVIS30006112
Fusion event
HIV-AMN1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
31839356/31686422 (Hg38)
End
31839356/31686422 (Hg38)
Orient
+
Location type
Intronic
Target gene
AMN1
Nearest miRNA
hsa-mir-1244-3/Upstream/5812343; hsa-let-7i/Downstream/10637278;
Nearest TSS
ENST00000382841/Upstream/24485; ENST00000619086/Downstream/28529;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/26965, chr12-CpG: 51/Downstream/42569
Upstream sequence
taatcccagctacttgggaggctgaggcaggagaagcacttgaacccaggaggtggaggttgcagtgagccaagatcatgcctctgcactccagcctggg
Downstream sequence
tgacagagtgagattctgcctcaaaaaaagaaaaaagaaaaTTGGTATTTATTGCTTCTCTCTAcagatgcttctcaatttatgatggggttacaccctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate