Basic Information
VIS ID
TVIS30006114
Fusion event
HIV-DNM1L integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
p11.21
Reference genome
GRCh37/hg19
Start
32848896/32695962 (Hg38)
End
32848896/32695962 (Hg38)
Orient
-
Location type
Intronic
Target gene
DNM1L
miRNAs that regulate target gene
hsa-mir-615-3p ; hsa-mir-25-3p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-93-5p ; hsa-mir-106b-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-21-5p
Nearest miRNA
hsa-mir-1244-3/Upstream/6821883; hsa-let-7i/Downstream/9627738;
Nearest TSS
ENST00000382841/Upstream/16254; ENST00000547719/Downstream/5453;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/15918, chr12-CpG: 44/Downstream/59478
Upstream sequence
aacagataataccttatgagggaaagaagctgaaaaggagaaagacattaaaaataaagagatgtaaaaagaattttgtagaaattgacacgttggaaac
Downstream sequence
aagtaaagaaaatccaacatatgtatattaggtgtccccaaagaagaaaactatagcaagggaacagaatgggtactaaaaattacaatacaagacaatt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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