VISDB Viral Integration Site DataBase

VIS ID

TVIS30006124

Fusion event

HIV-TWF1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q12

Reference genome

Start

End

44194770/43800967 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-155-5p ; hsa-mir-126-3p ; hsa-mir-30c-5p ; hsa-mir-193b-3p ; hsa-mir-32-3p ; hsa-mir-1303 ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-92a-3p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-92b-3p ; hsa-mir-491-3p ; hsa-mir-142-3p ; hsa-mir-214-3p ; hsa-mir-223-3p ; hsa-mir-106b-5p ; hsa-mir-20a-5p ; hsa-mir-6073 ; hsa-mir-5589-3p ; hsa-mir-4699-3p ; hsa-mir-7852-3p ; hsa-mir-6849-5p ; hsa-mir-4280 ; hsa-mir-3681-5p ; hsa-mir-302f ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-6883-3p ; hsa-mir-3162-3p ; hsa-mir-3074-3p ; hsa-mir-7849-3p ; hsa-mir-8054 ; hsa-mir-548k ; hsa-mir-548av-5p ; hsa-mir-548n ; hsa-mir-3977 ; hsa-mir-556-3p ; hsa-mir-4724-3p ; hsa-mir-1909-5p ; hsa-mir-520f-3p ; hsa-mir-302c-3p ; hsa-mir-577 ; hsa-mir-5680 ; hsa-mir-1252-3p ; hsa-mir-4762-3p ; hsa-mir-448 ; hsa-mir-488-3p ; hsa-mir-377-3p ; hsa-mir-6730-5p ; hsa-mir-5681a ; hsa-mir-4766-5p ; hsa-mir-216b-3p ; hsa-mir-513c-3p ; hsa-mir-513a-3p ; hsa-mir-3606-3p ; hsa-mir-4735-3p ; hsa-mir-18a-5p ; hsa-mir-18b-5p ; hsa-mir-8061 ; hsa-mir-4760-5p ; hsa-mir-8062 ; hsa-mir-5694 ; hsa-mir-383-5p ; hsa-mir-561-3p ; hsa-mir-548at-5p ; hsa-mir-107 ; hsa-mir-103a-3p ; hsa-mir-30e-5p ; hsa-mir-30d-5p ; hsa-mir-30b-5p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-93-5p ; hsa-mir-17-5p ; hsa-mir-206

Nearest miRNA

hsa-mir-1244-3/Upstream/1477108; hsa-let-7i/Downstream/3386845;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/41848, chr12-CpG: 86/Downstream/4860

Upstream sequence

agcctcccgagtagctgggattataggtgtgcgccaccacacttggctaattttttctatttttagtacagacgggctttcaccatgttggtcaagctgg

Downstream sequence

tctcaaactcctgacctctggtgatccactcgcctcggcttcccaaagtttagggattacaggcatgagccaccgtgcctggccACATTTTAAAGCTGAA