VISDB Viral Integration Site DataBase

VIS ID

TVIS30006130

Fusion event

HIV-SLC38A1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.11

Reference genome

Start

End

46598372/46204589 (Hg38)

Orient

-

Location type

Exonic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-let-7b-5p ; hsa-mir-30a-5p ; hsa-mir-218-5p ; hsa-mir-320d ; hsa-mir-877-3p ; hsa-mir-484 ; hsa-mir-570-3p ; hsa-mir-6074 ; hsa-mir-4726-3p ; hsa-mir-3671 ; hsa-mir-607 ; hsa-mir-340-5p ; hsa-mir-374a-5p ; hsa-mir-5590-3p ; hsa-mir-142-5p ; hsa-mir-570-5p ; hsa-mir-548ba ; hsa-mir-548ai ; hsa-mir-548ag ; hsa-mir-548m ; hsa-mir-4652-3p ; hsa-mir-4743-3p ; hsa-mir-4639-5p ; hsa-mir-6888-3p ; hsa-mir-374b-5p ; hsa-mir-3148 ; hsa-mir-6124 ; hsa-mir-215-3p ; hsa-mir-6773-3p ; hsa-mir-4317 ; hsa-mir-8076 ; hsa-mir-3688-3p ; hsa-mir-5692b ; hsa-mir-5692c ; hsa-mir-369-3p ; hsa-mir-4517 ; hsa-mir-5583-3p ; hsa-mir-1277-5p ; hsa-mir-2113 ; hsa-mir-889-3p ; hsa-mir-6847-3p ; hsa-mir-205-5p ; hsa-mir-506-5p ; hsa-mir-892c-5p ; hsa-mir-31-3p ; hsa-mir-136-5p ; hsa-mir-4716-5p ; hsa-mir-6868-3p ; hsa-mir-335-3p ; hsa-mir-5096 ; hsa-mir-513b-5p ; hsa-mir-6804-5p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-4446-5p ; hsa-mir-578 ; hsa-mir-3679-3p ; hsa-mir-6832-3p ; hsa-mir-329-5p ; hsa-mir-6748-5p ; hsa-mir-6880-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-5192 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/3880730; hsa-let-7i/Downstream/983223;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/212485, chr12-CpG: 180/Downstream/62682

Upstream sequence

TACTATCACAAAACCAAACCAACCATTGCAATCAGCACTTACCACAATTAGGAAAAAAACCATACAGCTCAAGGAAAATCCACTAGTATAGCCAAGATAC

Downstream sequence

CCtttaaaaaaaagtaaaaaataaattatttcatttttttccatttttaaaaattttGGAGCTACCCATCATAAACTGTTATTATTTCAAAATTCATCAC