Basic Information
VIS ID
TVIS30006132
Fusion event
HIV-PCED1B integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
47614200/47220417 (Hg38)
End
47614200/47220417 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12A
Target gene
PCED1B
miRNAs that regulate target gene
hsa-mir-7-5p
Nearest miRNA
hsa-mir-1244-3/Upstream/32526; hsa-let-7i/Downstream/143769;
Nearest TSS
ENST00000382841/Upstream/3819; ENST00000551777/Downstream/3084;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/140080, chr12-CpG: 44/Downstream/14834
Upstream sequence
tgtgccatgacaccaggctaatttttgtatttttagtagagactgggtttcaccatgttgatcaggctggtctcaaactcctgacctcaggtgatccacc
Downstream sequence
cacctcggcctcccaaagtgctgggattacaggcgtgagccactatgcccagccaaccttaggcaatttatataacctctccatgcctcagtttacttat
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate