VISDB Viral Integration Site DataBase

VIS ID

TVIS30006137

Fusion event

HIV-VDR integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.11

Reference genome

Start

End

48296165/47902382 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-125b-5p ; hsa-let-7a-5p ; hsa-mir-27b-3p ; hsa-mir-6807-5p ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-2861 ; hsa-mir-6735-3p ; hsa-mir-3195 ; hsa-mir-214-5p ; hsa-mir-6749-5p ; hsa-mir-6748-3p ; hsa-mir-4438 ; hsa-mir-4446-5p ; hsa-mir-3679-3p ; hsa-mir-6826-3p ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-153-5p ; hsa-mir-1250-3p ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-4659b-3p ; hsa-mir-4659a-3p ; hsa-mir-4279 ; hsa-mir-6792-3p ; hsa-mir-4691-5p ; hsa-mir-7704 ; hsa-mir-615-5p ; hsa-mir-4731-5p ; hsa-mir-942-5p ; hsa-mir-7155-5p ; hsa-mir-4766-5p ; hsa-mir-122-5p ; hsa-mir-124-3p ; hsa-mir-1262 ; hsa-mir-1293 ; hsa-mir-3165 ; hsa-mir-363-5p ; hsa-mir-3653-3p ; hsa-mir-4483 ; hsa-mir-4701-3p ; hsa-mir-504-3p ; hsa-mir-580-3p ; hsa-mir-6736-5p ; hsa-mir-6741-5p ; hsa-mir-6745 ; hsa-mir-6756-5p ; hsa-mir-6766-5p ; hsa-mir-6880-5p ; hsa-mir-8071

Nearest miRNA

hsa-mir-1244-3/Upstream/538113; hsa-let-7i/Downstream/230415;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/81977, chr12-CpG: 69/Downstream/2480

Nearest cancer related gene

VDR(TSG, No orient, 0)

Upstream sequence

GGTTAGGGACAAATCAGAGGGAAGCAAAATGACAAGCAAGGCCTTGGTGGCCCAGAGTGGCAGCCAGGCTGGCTTCAGCCCAGCTGGATCCTCTCAGAAC

Downstream sequence

TGGACAATAGTGGAGGGAGAGCCTGAGAACTGCTGCCCACCCTGGGGCTCAAACTGTCTtggagtcaggggcctggtctggtgggttctgcttcctgcta