Basic Information
VIS ID
TVIS30006139
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
48951927/48558144 (Hg38)
End
48951927/48558144 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12A
Nearest miRNA
hsa-mir-1244-3/Upstream/425277; hsa-let-7i/Downstream/96300;
Nearest TSS
ENST00000382841/Upstream/32512; ENST00000328207/Downstream/1738;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/29798, chr12-CpG: 66/Downstream/123562
Nearby gene
LALBA(No orient, 9540)
Upstream sequence
TTGATGATGCAACCCACTGAAATGAGAATGATACAAGGGAGAAGTAGTTGGCCCTGGAGAACCCGTTCAGAATCAGAACAGGCCTCCTGCTTAAGGACCT
Downstream sequence
CTCCAGGGACCTCCCTCACTCTCCAAGGCCTAGAGCTGAGATCAAGTCCCTCTGGCCATTATTATTTGGGAGGTAGATTCAAGGCTTCCCCTTGGACAGA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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