Basic Information
VIS ID
TVIS30006145
Fusion event
HIV-LOC105369760 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.12
Reference genome
GRCh37/hg19
Start
49540477/49146694 (Hg38)
End
49540477/49146694 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA12A
Target gene
LOC105369760
Nearest miRNA
hsa-mir-1244-3/Upstream/374657; hsa-let-7i/Downstream/1087448;
Nearest TSS
ENST00000382841/Upstream/14984; ENST00000549554/Downstream/40170;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/14985, chr12-CpG: 67/Downstream/41619
Nearby gene
TUBA1B(No orient, 15173)
Upstream sequence
gtaataaccaggagagctggatagggatgttcaataaaaggcggggttttctttttgtttttgtttctaaggtgggagctattttagaatatttgtttgc
Downstream sequence
taatgagaaaaaaaaaacaaaaggtaaaatccatgttgtggggaaaaggagcaaagctttagagtagtgaaatggaaaggcacccagtgcaccatggagg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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