Basic Information
VIS ID
TVIS30006158
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
53657962/53264178 (Hg38)
End
53657962/53264178 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA12A
Nearest miRNA
hsa-mir-1244-3/Upstream/207166; hsa-let-7i/Downstream/727560;
Nearest TSS
ENST00000382841/Upstream/11729; ENST00000553219/Downstream/4121;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/12036, chr12-CpG: 56/Downstream/3966
Nearby gene
ESPL1(No orient, 4121)
Nearest cancer related gene
ESPL1(OG, No orient, 4121)
Upstream sequence
ccacccatccctcaacaggaccccgtgtgtgatgctcttctccctgtgtccatgtgttcattgttcaactcccactatgagtgagaacatgcggtgtttg
Downstream sequence
gttttctgttcttgtgttagtttactaagaatgatcgtttccagcttcatccatgtccctgcaaaggacgtgaactcatcgtttcgtatggctgcatagt
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate