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Viral Integration Site DataBase
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TVIS30006159
Basic Information
VIS ID
TVIS30006159
Fusion event
HIV-SP1 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
53781708/53387924 (Hg38)
End
53781708/53387924 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA12A
Target gene
SP1
miRNAs that regulate target gene
hsa-mir-29b-3p
;
hsa-mir-27a-3p
;
hsa-mir-124-3p
;
hsa-mir-218-5p
;
hsa-mir-21-5p
;
hsa-mir-375
;
hsa-mir-149-5p
;
hsa-mir-22-3p
;
hsa-mir-335-5p
;
hsa-mir-16-5p
;
hsa-mir-1-3p
;
hsa-mir-133a-3p
;
hsa-mir-625-5p
;
hsa-mir-99b-5p
;
hsa-mir-186-5p
;
hsa-mir-125a-5p
;
hsa-let-7f-5p
;
hsa-let-7b-5p
;
hsa-let-7a-5p
;
hsa-mir-200b-3p
;
hsa-mir-200c-3p
;
hsa-mir-145-5p
;
hsa-mir-133b
;
hsa-mir-155-5p
;
hsa-mir-4530
;
hsa-mir-6734-5p
;
hsa-mir-4667-5p
;
hsa-mir-4700-5p
;
hsa-mir-8089
;
hsa-mir-129-5p
;
hsa-mir-4276
;
hsa-mir-4428
;
hsa-mir-4533
;
hsa-mir-4747-5p
;
hsa-mir-5196-5p
;
hsa-mir-190a-3p
;
hsa-mir-31-3p
;
hsa-mir-296-5p
;
hsa-mir-518a-5p
;
hsa-mir-527
;
hsa-mir-4749-3p
;
hsa-mir-7160-3p
;
hsa-mir-374a-5p
;
hsa-mir-374b-5p
;
hsa-mir-6752-3p
;
hsa-mir-31-5p
;
hsa-mir-202-3p
;
hsa-mir-605-3p
;
hsa-mir-922
;
hsa-mir-3153
;
hsa-mir-4257
;
hsa-mir-2467-3p
;
hsa-mir-6126
;
hsa-mir-6733-5p
;
hsa-mir-6739-5p
;
hsa-mir-6835-3p
;
hsa-mir-7977
;
hsa-mir-369-3p
;
hsa-mir-410-3p
;
hsa-mir-5011-5p
;
hsa-mir-5692c
;
hsa-mir-5692b
;
hsa-mir-24-3p
;
hsa-mir-4668-5p
;
hsa-mir-8485
;
hsa-mir-1277-5p
;
hsa-mir-3127-3p
;
hsa-mir-4691-5p
;
hsa-mir-6756-3p
;
hsa-mir-6792-3p
;
hsa-mir-216a-3p
;
hsa-mir-128-3p
;
hsa-mir-3681-3p
;
hsa-mir-5582-5p
;
hsa-mir-6124
;
hsa-mir-330-3p
;
hsa-mir-33a-5p
;
hsa-mir-150-5p
;
hsa-mir-711
;
hsa-mir-223-3p
;
hsa-mir-6738-5p
;
hsa-mir-5194
;
hsa-mir-1914-3p
;
hsa-mir-423-5p
;
hsa-mir-3184-5p
;
hsa-mir-5190
;
hsa-mir-6794-5p
;
hsa-mir-4716-3p
;
hsa-mir-6083
;
hsa-mir-2110
;
hsa-mir-1200
;
hsa-mir-378a-5p
;
hsa-mir-7159-5p
;
hsa-mir-6780b-5p
;
hsa-mir-4725-3p
;
hsa-mir-4271
;
hsa-mir-4493
;
hsa-mir-6852-5p
;
hsa-mir-3140-5p
;
hsa-mir-6791-5p
;
hsa-mir-4292
;
hsa-mir-4308
;
hsa-mir-3065-5p
;
hsa-mir-6871-5p
;
hsa-mir-5590-5p
;
hsa-mir-6749-3p
;
hsa-mir-211-5p
;
hsa-mir-204-5p
;
hsa-mir-2355-5p
;
hsa-mir-4685-3p
;
hsa-mir-4287
;
hsa-mir-6832-3p
;
hsa-mir-6793-3p
;
hsa-mir-186-3p
;
hsa-mir-141-5p
;
hsa-mir-466
;
hsa-mir-4672
;
hsa-mir-3941
;
hsa-mir-603
;
hsa-mir-362-3p
;
hsa-mir-329-3p
;
hsa-mir-3692-3p
;
hsa-mir-5006-3p
;
hsa-mir-4755-5p
;
hsa-mir-670-5p
;
hsa-mir-4312
;
hsa-mir-6859-3p
;
hsa-mir-627-3p
;
hsa-mir-1248
;
hsa-mir-6747-3p
;
hsa-mir-216b-3p
;
hsa-mir-670-3p
;
hsa-mir-520f-5p
;
hsa-mir-6796-3p
;
hsa-mir-27b-3p
;
hsa-mir-29c-3p
;
hsa-mir-612
;
hsa-mir-324-5p
;
hsa-mir-429
;
hsa-mir-326
;
hsa-mir-137
;
hsa-mir-892b
Nearest miRNA
hsa-mir-1244-3/Upstream/330912; hsa-let-7i/Downstream/603814;
Nearest TSS
ENST00000382841/Upstream/6622;
ENST00000553037/Downstream/35931;
Nearest CpG islands
None/Target,
chr12-CpG: 104/Upstream/7105
,
chr12-CpG: 17/Downstream/53633
Upstream sequence
aatacaaaaaaattagctgggcgtggtggtgggtgcctgtaatctcagctactagggaggctgaggcaggagaatgatgtgaacctgggaggcagagcgt
Downstream sequence
gcagtgagctgagattgtgccactgcactccagcctgggtgacagagcgagactccgtctcaaaaaaaaaaaaTGTATTCGAAAAGGTGTTTTTGATTTA
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Sample Information
×
Sample name
Central Memory CD4+
Sample type
Cell line
Gender
Female
CpG Island Information
×
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