VISDB Viral Integration Site DataBase

VIS ID

TVIS30006160

Fusion event

HIV-SP1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.13

Reference genome

Start

End

53782458/53388674 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-29b-3p ; hsa-mir-27a-3p ; hsa-mir-124-3p ; hsa-mir-218-5p ; hsa-mir-21-5p ; hsa-mir-375 ; hsa-mir-149-5p ; hsa-mir-22-3p ; hsa-mir-335-5p ; hsa-mir-16-5p ; hsa-mir-1-3p ; hsa-mir-133a-3p ; hsa-mir-625-5p ; hsa-mir-99b-5p ; hsa-mir-186-5p ; hsa-mir-125a-5p ; hsa-let-7f-5p ; hsa-let-7b-5p ; hsa-let-7a-5p ; hsa-mir-200b-3p ; hsa-mir-200c-3p ; hsa-mir-145-5p ; hsa-mir-133b ; hsa-mir-155-5p ; hsa-mir-4530 ; hsa-mir-6734-5p ; hsa-mir-4667-5p ; hsa-mir-4700-5p ; hsa-mir-8089 ; hsa-mir-129-5p ; hsa-mir-4276 ; hsa-mir-4428 ; hsa-mir-4533 ; hsa-mir-4747-5p ; hsa-mir-5196-5p ; hsa-mir-190a-3p ; hsa-mir-31-3p ; hsa-mir-296-5p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-4749-3p ; hsa-mir-7160-3p ; hsa-mir-374a-5p ; hsa-mir-374b-5p ; hsa-mir-6752-3p ; hsa-mir-31-5p ; hsa-mir-202-3p ; hsa-mir-605-3p ; hsa-mir-922 ; hsa-mir-3153 ; hsa-mir-4257 ; hsa-mir-2467-3p ; hsa-mir-6126 ; hsa-mir-6733-5p ; hsa-mir-6739-5p ; hsa-mir-6835-3p ; hsa-mir-7977 ; hsa-mir-369-3p ; hsa-mir-410-3p ; hsa-mir-5011-5p ; hsa-mir-5692c ; hsa-mir-5692b ; hsa-mir-24-3p ; hsa-mir-4668-5p ; hsa-mir-8485 ; hsa-mir-1277-5p ; hsa-mir-3127-3p ; hsa-mir-4691-5p ; hsa-mir-6756-3p ; hsa-mir-6792-3p ; hsa-mir-216a-3p ; hsa-mir-128-3p ; hsa-mir-3681-3p ; hsa-mir-5582-5p ; hsa-mir-6124 ; hsa-mir-330-3p ; hsa-mir-33a-5p ; hsa-mir-150-5p ; hsa-mir-711 ; hsa-mir-223-3p ; hsa-mir-6738-5p ; hsa-mir-5194 ; hsa-mir-1914-3p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-5190 ; hsa-mir-6794-5p ; hsa-mir-4716-3p ; hsa-mir-6083 ; hsa-mir-2110 ; hsa-mir-1200 ; hsa-mir-378a-5p ; hsa-mir-7159-5p ; hsa-mir-6780b-5p ; hsa-mir-4725-3p ; hsa-mir-4271 ; hsa-mir-4493 ; hsa-mir-6852-5p ; hsa-mir-3140-5p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-4308 ; hsa-mir-3065-5p ; hsa-mir-6871-5p ; hsa-mir-5590-5p ; hsa-mir-6749-3p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-2355-5p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-6832-3p ; hsa-mir-6793-3p ; hsa-mir-186-3p ; hsa-mir-141-5p ; hsa-mir-466 ; hsa-mir-4672 ; hsa-mir-3941 ; hsa-mir-603 ; hsa-mir-362-3p ; hsa-mir-329-3p ; hsa-mir-3692-3p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-670-5p ; hsa-mir-4312 ; hsa-mir-6859-3p ; hsa-mir-627-3p ; hsa-mir-1248 ; hsa-mir-6747-3p ; hsa-mir-216b-3p ; hsa-mir-670-3p ; hsa-mir-520f-5p ; hsa-mir-6796-3p ; hsa-mir-27b-3p ; hsa-mir-29c-3p ; hsa-mir-612 ; hsa-mir-324-5p ; hsa-mir-429 ; hsa-mir-326 ; hsa-mir-137 ; hsa-mir-892b

Nearest miRNA

hsa-mir-1244-3/Upstream/331662; hsa-let-7i/Downstream/603064;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/7855, chr12-CpG: 17/Downstream/52883

Upstream sequence

TTGTGTAGTATTTCCCCTTTAATTGATATGACTTCATCCTTAAAGAAAGATAATAAAATCACTTCCTAGAGGCTTACTCCTTTTTCAGCTTTTGCCTTCC

Downstream sequence

TGCTGGCAAAAGTATCTTGTTTTggccaggcgtagtggctcatgcctgtaatcccagcactttgggaggccaaggcaggcagatctcttgagctcaggag