VISDB Viral Integration Site DataBase

VIS ID

TVIS30006164

Fusion event

HIV-HNRNPA1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.13

Reference genome

Start

End

54680589/54286805 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-1-3p ; hsa-mir-30a-5p ; hsa-mir-19b-3p ; hsa-mir-1296-5p ; hsa-mir-1229-3p ; hsa-mir-22-5p ; hsa-mir-615-3p ; hsa-mir-484 ; hsa-mir-339-5p ; hsa-mir-324-5p ; hsa-mir-194-5p ; hsa-mir-186-5p ; hsa-mir-197-3p ; hsa-mir-96-5p ; hsa-mir-25-3p ; hsa-mir-1260b ; hsa-mir-466 ; hsa-mir-4643 ; hsa-mir-5585-5p ; hsa-mir-4284 ; hsa-mir-6837-3p ; hsa-mir-6754-3p ; hsa-mir-412-3p ; hsa-mir-4330 ; hsa-mir-5693 ; hsa-mir-577 ; hsa-mir-548m ; hsa-mir-24-3p ; hsa-mir-513b-5p ; hsa-mir-125b-2-3p ; hsa-mir-4457 ; hsa-mir-4452 ; hsa-mir-8070 ; hsa-mir-183-3p ; hsa-mir-203b-3p ; hsa-mir-7158-3p ; hsa-mir-3689f ; hsa-mir-3689e ; hsa-mir-3689b-5p ; hsa-mir-3689a-5p ; hsa-mir-219a-2-3p ; hsa-mir-219b-3p ; hsa-mir-8073 ; hsa-mir-6868-5p ; hsa-mir-221-5p ; hsa-mir-1179 ; hsa-mir-6505-5p ; hsa-mir-323a-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-206 ; hsa-mir-613 ; hsa-mir-4444 ; hsa-mir-4641 ; hsa-mir-1910-5p ; hsa-mir-4789-3p ; hsa-mir-129-5p ; hsa-mir-496 ; hsa-mir-4477a ; hsa-mir-660-5p ; hsa-mir-1273d ; hsa-mir-548z ; hsa-mir-548h-3p ; hsa-mir-548d-3p ; hsa-mir-548bb-3p ; hsa-mir-548ac ; hsa-mir-3169 ; hsa-mir-2113 ; hsa-mir-3674 ; hsa-mir-6842-3p ; hsa-mir-647 ; hsa-mir-4715-3p ; hsa-mir-6844 ; hsa-mir-4524b-5p ; hsa-mir-4524a-5p ; hsa-mir-3613-5p ; hsa-mir-636 ; hsa-mir-6775-3p ; hsa-mir-1291 ; hsa-mir-8077 ; hsa-mir-6799-3p ; hsa-mir-3173-5p ; hsa-mir-4778-3p ; hsa-mir-367-5p ; hsa-mir-1267 ; hsa-mir-7157-3p ; hsa-mir-6737-3p ; hsa-mir-5008-3p ; hsa-mir-3137 ; hsa-mir-4682 ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6752-3p ; hsa-mir-4719 ; hsa-mir-4762-5p ; hsa-mir-4747-3p ; hsa-mir-646 ; hsa-mir-649 ; hsa-mir-6838-5p ; hsa-mir-195-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-424-5p ; hsa-mir-503-5p ; hsa-mir-15a-5p ; hsa-mir-497-5p ; hsa-mir-218-5p ; hsa-mir-8057 ; hsa-mir-3191-5p ; hsa-mir-4279 ; hsa-mir-7111-3p ; hsa-mir-670-5p ; hsa-mir-6822-3p ; hsa-mir-942-5p ; hsa-mir-6773-3p ; hsa-mir-664a-5p ; hsa-mir-4794 ; hsa-mir-6824-3p ; hsa-mir-6764-3p ; hsa-mir-518c-5p ; hsa-mir-6845-3p ; hsa-mir-1976 ; hsa-mir-3653-5p ; hsa-mir-6769b-3p ; hsa-mir-4723-3p ; hsa-mir-3183 ; hsa-mir-668-3p ; hsa-mir-330-5p ; hsa-mir-326 ; hsa-mir-3064-5p ; hsa-mir-6504-5p ; hsa-mir-149-5p ; hsa-mir-760 ; hsa-mir-370-3p ; hsa-mir-6893-3p ; hsa-mir-490-5p

Nearest miRNA

hsa-mir-1244-3/Upstream/55329; hsa-let-7i/Downstream/50411;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/5601, chr12-CpG: 18/Downstream/82468

Nearby gene

HNRNPA1(No orient, 1559)

Nearest cancer related gene

HNRNPA1(OG, No orient, 0)

Upstream sequence

TCATCTGTCCAAGTTCGTGGCAGAAAGGTAAGTTTTTACAAATTAGTGCTCAGCAAAAGAATGCCCTGCGTTCCCAAAGTAAAAGAATGACAAGCTGTAC

Downstream sequence

CTTAAACCAAAACACTTCGTAATCTCATCCAATTGCAAAAAGAGTTATTAGCCAACCAGGTATTCCCAGTAGTGACAGTGGATATAACTGTGTAGTCATT