Basic Information
VIS ID
TVIS30006170
Fusion event
HIV-SARNP integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
56181894/55788110 (Hg38)
End
56181894/55788110 (Hg38)
Orient
-
Location type
Intronic
Target gene
SARNP
Nearest miRNA
hsa-mir-1244-3/Upstream/1450796; hsa-let-7i/Downstream/1406394;
Nearest TSS
ENST00000382841/Upstream/27325; ENST00000546645/Downstream/29599;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/44110, chr12-CpG: 17/Downstream/29431
Upstream sequence
agtgctgggattacaggcgtgagccaccacgcctggccCGATTTTTTTCTTAAATGCTGGTTTTTCTGGTTTCAAATACCCTGCCACCACTTTGACAACC
Downstream sequence
AAGAAACATGTTCTTGTTCTAAACAACAAAGATTAAGAGACCACCTGCTCTAGGCAAATAGAAAAATCCTTATCATTTTCTCCAATGTGCCTAGCAAAAC
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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