Basic Information
VIS ID
TVIS30006172
Fusion event
HIV-DGKA integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
56338399/55944615 (Hg38)
End
56338399/55944615 (Hg38)
Orient
-
Location type
Intronic
Target gene
DGKA
miRNAs that regulate target gene
hsa-mir-124-3p ; hsa-mir-484
Nearest miRNA
hsa-mir-1244-3/Upstream/1607301; hsa-let-7i/Downstream/1249889;
Nearest TSS
ENST00000382841/Upstream/3330; ENST00000550957/Downstream/8313;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/12176, chr12-CpG: 34/Downstream/22068
Upstream sequence
GAAGAGGGGGGAttgaagggattatcactatgggagctctgtggaagatggattgtaggaaggagacagaataggaaattacctgtttgcagtagtccag
Downstream sequence
acaagagatgatgaatacagaagccaaggcagcagcagtggagttaatgaggtagaagccacagctctggataactgataggttgtggagaaggaggtag
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
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