Basic Information
VIS ID
TVIS30006180
Fusion event
HIV-chr12 integration
Validated
No
Detection method
QiaQuick PCR and Sequencing
Data source
download(RID)
Sample type
Cell line
Disease
HIV-infected disease (HID)
Quality evaluation
Normal
Reported year
2013
PubMed ID
23953889
Virus Sequence
Virus name
HIV
Reference genome
Not given
Host Sequence
Chromosome
chr12
Cytoband
q13.2
Reference genome
GRCh37/hg19
Start
56466061/56072277 (Hg38)
End
56466061/56072277 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1244-3/Upstream/1734963; hsa-let-7i/Downstream/1122227;
Nearest TSS
ENST00000382841/Upstream/30137; ENST00000643518/Downstream/4522;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/29655, chr12-CpG: 114/Downstream/6731
Nearby gene
ERBB3(No orient, 7748)
Nearest cancer related gene
ERBB3(OG, No orient, 7748)
Upstream sequence
cagtggctcatgcctgtaatcccagcactttgagaggctgaggcgagcagatcacctgaggtcaggagtttgacactagcccggccaatatggcgaaaac
Downstream sequence
ctatctctactaaaaatacaaaaattagctgggcgtggtggcacCAcaggcctatgttaactctcttgccctctatcataaaacaatatgaacagatctg
Reference
Sherrill-Mix, S., et al. HIV latency and integration site placement in five cell-based models.2013, Retrovirology 10: 90.
Curate