VISDB Viral Integration Site DataBase

VIS ID

TVIS30006186

Fusion event

HIV-PRIM1 integration

Validated

No

Detection method

QiaQuick PCR and Sequencing

Data source

download(RID)

Sample type

Disease

HIV-infected disease (HID)

Quality evaluation

Normal

Reported year

2013

PubMed ID

Virus name

HIV

Reference genome

Not given

Chromosome

chr12

Cytoband

q13.3

Reference genome

Start

End

57141723/56747939 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-15a-5p ; hsa-let-7b-5p ; hsa-mir-193b-3p ; hsa-mir-215-5p ; hsa-mir-34a-5p ; hsa-mir-192-5p ; hsa-mir-30a-5p ; hsa-mir-24-3p ; hsa-mir-197-3p ; hsa-mir-665 ; hsa-mir-3622b-5p ; hsa-mir-7160-5p ; hsa-mir-4722-5p ; hsa-mir-6884-5p ; hsa-mir-485-5p ; hsa-mir-6823-3p ; hsa-mir-1827 ; hsa-mir-2114-3p ; hsa-mir-4649-3p ; hsa-mir-4768-3p ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-5197-5p ; hsa-mir-6808-5p ; hsa-mir-5089-5p ; hsa-mir-4325 ; hsa-mir-6807-5p ; hsa-mir-4455 ; hsa-mir-5589-5p ; hsa-mir-4731-5p ; hsa-mir-4252 ; hsa-mir-6506-5p ; hsa-mir-619-5p ; hsa-mir-4793-3p ; hsa-mir-1273g-3p ; hsa-mir-3614-5p ; hsa-mir-520h ; hsa-mir-520g-3p ; hsa-mir-512-3p ; hsa-mir-520e ; hsa-mir-520d-3p ; hsa-mir-520c-3p ; hsa-mir-520b ; hsa-mir-520a-3p ; hsa-mir-373-3p ; hsa-mir-372-3p ; hsa-mir-302e ; hsa-mir-302d-3p ; hsa-mir-302c-3p ; hsa-mir-302b-3p ; hsa-mir-302a-3p ; hsa-mir-93-5p ; hsa-mir-526b-3p ; hsa-mir-519d-3p ; hsa-mir-20b-5p ; hsa-mir-20a-5p ; hsa-mir-17-5p ; hsa-mir-106b-5p ; hsa-mir-106a-5p ; hsa-mir-3157-5p ; hsa-mir-4474-5p ; hsa-mir-8086 ; hsa-mir-4755-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-888-3p ; hsa-mir-606 ; hsa-mir-7151-3p ; hsa-mir-5095 ; hsa-mir-4269 ; hsa-mir-6715b-5p ; hsa-mir-500b-3p ; hsa-mir-5003-5p ; hsa-mir-5582-5p ; hsa-mir-4482-5p ; hsa-mir-3130-5p ; hsa-mir-4438 ; hsa-mir-3591-3p ; hsa-mir-21-3p ; hsa-mir-4668-5p ; hsa-mir-4753-3p ; hsa-mir-130b-5p ; hsa-mir-3184-3p ; hsa-mir-4422 ; hsa-mir-548e-5p ; hsa-mir-6778-3p ; hsa-mir-150-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-6747-3p ; hsa-mir-186-3p ; hsa-mir-221-5p ; hsa-mir-3165 ; hsa-mir-363-5p ; hsa-mir-3656 ; hsa-mir-4433a-3p ; hsa-mir-4459 ; hsa-mir-4683 ; hsa-mir-4786-5p ; hsa-mir-4793-5p ; hsa-mir-6502-3p ; hsa-mir-6745 ; hsa-mir-6888-5p ; hsa-mir-8073

Nearest miRNA

hsa-mir-1244-3/Upstream/2410625; hsa-let-7i/Downstream/446565;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/22349, chr12-CpG: 49/Downstream/4120

Upstream sequence

taggctgtcagtaaggaaagataagaggcgcaacccaatttatacctcagaacccccaaaaggctcagggataggtgataccaggtattgttggaatgag

Downstream sequence

taagtgcgtgtttagtgaagctgagatgaaaaacaggaagatttttcaaggccacccttgactgaaggaaaaaaaaaaggaggattggttcaaagcatag